BioSB/ELIXIR-NL course: Managing and Integrating Life Science Information (5th edition): Approaches using Linked Data and Semantics

 

Date

22-26 January 2018

flyer

Flyer of the 2015 edition of the course

Lecturers

Confirmed lecturers: Frank van Harmelen, Andre Dekker

Course Coordinators

Marco Roos and Katy Wolstencroft

Credits and grading

The total study load of the course is 3 EC. There will not be a written examination.

Location

Amsterdam Science Park, The Netherlands

Hosted by: Amsterdam Data Science

 

 

 

Limitations

None. We assume participants will bring their own laptop. Please indicated in the remarks box of the registration form if this is not the case.

Background

The amount of Life Science data available in the public domain is a vast and growing resource for bioinformatics research. There are over 20 million papers in PubMed and over 1600 biological databases. In many cases finding and applying the information from these resources is far from trivial. Following this course will show you techniques for working with these distributed resources, which includes using the web of Linked data and scientific workflows. It will also focus on methods for using or linking your own data into this large distributed Semantic Web of resources, in order to ensure that your data is FAIR (Findable, Accessible, Interoperable and Reusable).

Target audience

This course is for bioinformaticians who would like to learn about leading-edge data and knowledge integration solutions. You will learn (1) powerful and flexible approaches to data and information management for your bioinformatics application (Semantic Web and Linked Data), (2) how to work with data across remote locations, for instance by applying Web Services and workflows, (3) how to publish your own data to make it available and reusable for the rest of the community. We assume a basic understanding of bioinformatics programming for the hands on sessions. It would suit previous user participants of BYOD meetings who would like more hands-on experience of data integration. It would also suit data providers who would like to explore new ways of serving their data or integrating it with other resources.

Course description

This course introduces modern techniques for the management of life science data and knowledge for bioinformatics applications. After following this course students should be able to start creating their first applications based on these technologies or make more informed design decisions for their current application.

In this course you will learn about:

  1. Linked Data and the Semantic Web technologies that underpin it
  2. How you can use Linked Data for data and knowledge integration in the Life Sciences
  3. Available Linked Data resources in the public domain and large-scale projects that use these resources
  4. How you can integrate your own data with Linked Data resources
  5. How you can combine data integration and analysis over distributed resources, using Web Services and workflows

Tentative programme

The program will include the topics:

  • Introduction to Semantic Interoperability and the Semantic Web;
  • The Semantic Web in Use;
  • The Semantic web in use – systems and guidelines;
  • Data stewardship and making Data Understandable and Searchable (the FAIR principles);
  • Using, Integrating and Analysing Data

More information

For more information about the course programme you can contact Marco Roos or Katy Wolstencroft.
For more information about the registration or logistics you can contact the BioSB office.

Registration

You can now register for the course via the Enrollment form.

Earlier editions

You can find more information about the earlier editions of the course here: